Customize seaborn heatmap


The previous post explains how to make a heatmap from 3 different input formats. This post aims to describe customizations you can make to a heatmap.

You can customize a heatmap in several ways. Following examples will demonstrate these ways.

Annotate each cell with value

The heatmap can show the exact value behind the color. To add a label to each cell, annot parameter of the heatmap() function should be set to True.

# libraries
import seaborn as sns
import pandas as pd
import numpy as np
 
# Create a dataset
df = pd.DataFrame(np.random.random((10,10)), columns=["a","b","c","d","e","f","g","h","i","j"])

# plot a heatmap with annotation
sns.heatmap(df, annot=True, annot_kws={"size": 7})
<AxesSubplot:>

Custom grid lines

The following parameters will make customizations to the heatmap plot:

  • linewidth : the thickness of the lines
  • linecolor : the color of the lines
# libraries
import seaborn as sns
import pandas as pd
import numpy as np
 
# Create a dataset
df = pd.DataFrame(np.random.random((10,10)), columns=["a","b","c","d","e","f","g","h","i","j"])

# plot a heatmap with custom grid lines
sns.heatmap(df, linewidths=2, linecolor='yellow')
<AxesSubplot:>

Remove X or Y labels

yticklabels and xticklabels control the presence / abscence of labels for the Y and X axis respectively.

# libraries
import seaborn as sns
import pandas as pd
import numpy as np
 
# Create a dataset
df = pd.DataFrame(np.random.random((10,10)), columns=["a","b","c","d","e","f","g","h","i","j"])

# plot a heatmap
sns.heatmap(df, yticklabels=False)
<AxesSubplot:>

Remove color bar

You can remove the color bar from a heatmap plot by giving False to the parameter cbar.

# libraries
import seaborn as sns
import pandas as pd
import numpy as np
 
# Create a dataset
df = pd.DataFrame(np.random.random((10,10)), columns=["a","b","c","d","e","f","g","h","i","j"])

# plot a heatmap
sns.heatmap(df, cbar=False) 
<AxesSubplot:>

Hide a few axis labels to avoid overlapping

As you can remove x or y labels by setting xticklabels or yticklabels as False, you can also give an integer to plot only every n label.

# libraries
import seaborn as sns
import pandas as pd
import numpy as np
 
# Create a dataset
df = pd.DataFrame(np.random.random((10,10)), columns=["a","b","c","d","e","f","g","h","i","j"])

# plot a heatmap
sns.heatmap(df, xticklabels=4)
<AxesSubplot:>

Scatterplot

Heatmap

Correlogram

Bubble

Connected Scatter

2D Density

Contact & Edit

👋 This document is a work by Yan Holtz. Any feedback is highly encouraged. You can fill an issue on Github, drop me a message onTwitter, or send an email pasting yan.holtz.data with gmail.com.

This page is just a jupyter notebook, you can edit it here. Please help me making this website better 🙏!

Violin

Density

Histogram

Boxplot

Ridgeline

Scatterplot

Heatmap

Correlogram

Bubble

Connected Scatter

2D Density

Barplot

Spider / Radar

Wordcloud

Parallel

Lollipop

Circular Barplot

Treemap

Venn Diagram

Donut

Pie Chart

Dendrogram

Circular Packing

Line chart

Area chart

Stacked Area

Streamgraph

Timeseries with python

Timeseries

Map

Choropleth

Hexbin

Cartogram

Connection

Bubble

Chord Diagram

Network

Sankey

Arc Diagram

Edge Bundling

Colors

Interactivity

Animation with python

Animation

Cheat sheets

Caveats

3D